Index

A

addView() (refocusing.saRefocus method)

C

clearViews() (refocusing.saRefocus method)

F

fileIO (C++ class)

fileIO::fileIO (C++ function) fileIO::operator<< (C++ function), [1], [2], [3], [4], [5]

G

get_match_counts() (tracking.pTracking method) getC() (refocusing.saRefocus method)

getP() (refocusing.saRefocus method) (tracking.pTracking method)

I

imageIO (C++ class)

init_logging (C++ function) initializeGPU() (refocusing.saRefocus method)

L

linspace (C++ function) localizer_settings (C++ class) localizer_settings::cluster_size (C++ member) localizer_settings::dz (C++ member)

localizer_settings::thresh (C++ member) localizer_settings::window (C++ member) localizer_settings::zmax (C++ member) localizer_settings::zmethod (C++ member) localizer_settings::zmin (C++ member)

M

mtiffReader (C++ class)

P

parse_refocus_settings (C++ function) particle2d (C++ class) particle2d::I (C++ member) particle2d::size (C++ member) particle2d::x (C++ member) particle2d::y (C++ member) particle2d::z (C++ member) pLocalize (C++ class) pLocalize::detected_particles (C++ function) pLocalize::find_particles_3d (C++ function) pLocalize::find_particles_all_frames (C++ function) pLocalize::pLocalize (C++ function)

pLocalize::write_all_particles (C++ function) pLocalize::write_all_particles_to_file (C++ function) project_point() (refocusing.saRefocus method) pTracking (C++ class) (class in tracking) pTracking::find_long_paths (C++ function) pTracking::find_sized_paths (C++ function) pTracking::pTracking (C++ function) pTracking::set_vars (C++ function) pTracking::track_all (C++ function) pTracking::track_frames (C++ function) pTracking::write_tracking_result (C++ function)

Q

qimshow (C++ function)

R

read_calib_data() (refocusing.saRefocus method) read_imgs() (refocusing.saRefocus method) refocus() (refocusing.saRefocus method) refocus_settings (C++ class) refocus_settings::all_frames (C++ member) refocus_settings::calib_file_path (C++ member) refocus_settings::end_frame (C++ member) refocus_settings::hf_method (C++ member) refocus_settings::images_path (C++ member) refocus_settings::minlos (C++ member)

refocus_settings::mtiff (C++ member) refocus_settings::mult (C++ member) refocus_settings::mult_exp (C++ member) refocus_settings::resize_images (C++ member) refocus_settings::rf (C++ member) refocus_settings::shifts (C++ member) refocus_settings::skip (C++ member) refocus_settings::start_frame (C++ member) refocus_settings::undistort (C++ member) refocus_settings::use_gpu (C++ member)

S

saRefocus (C++ class) (class in refocusing) saRefocus::GPUliveView (C++ function) saRefocus::initializeGPU (C++ function) saRefocus::read_calib_data (C++ function) saRefocus::read_calib_data_pin (C++ function) saRefocus::read_imgs (C++ function) saRefocus::read_imgs_mtiff (C++ function)

saRefocus::refocus (C++ function) saRefocus::saRefocus (C++ function), [1] saveScene (C++ function) set_vars() (tracking.pTracking method) setF() (refocusing.saRefocus method) setHF() (refocusing.saRefocus method) setMult() (refocusing.saRefocus method) setRefractive() (refocusing.saRefocus method) showSettings() (refocusing.saRefocus method)

T

tools (module)

track_frame() (tracking.pTracking method)

W

write_quiver_data() (tracking.pTracking method)